PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28166.m001040

Common Name

RCOM_0180000

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

GRAS

Protein Properties

Length: 459aa MW: 51523.1 Da PI: 6.6667

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28166.m001040	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	61.4	1.8e-19	199	289	1	94
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+a+s+++ ++ ++l+++ + +s +g+p+qRl ay++e+L ar +s++++y+al+++e + s++ l+++++++e++P+lkf+ 28166.m001040 199 LKQLLIACAKALSENNINEFDRLIEKARAAVSISGEPIQRLGAYLVEGLVARKESSGNNIYHALRCREPE---SKDLLSYMQILYEICPYLKFG 289 689****************************************************************9...9*****************8 PP
2	GRAS	191.3	6.4e-59	298	458	212	373
GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307 desv+++++rd +L+++ksl+Pkvv++veqe+++n+++Fl+rf+e+l++y a+f+s+++ lpre ++ri vE+++l+++ivn++aceg+er+e 28166.m001040 298 PHSDESVDVSNPRDGLLRMIKSLNPKVVTLVEQESNTNTTPFLTRFMETLDFYLAMFESIDVRLPRERKDRIGVEQHCLAKDIVNIIACEGKERVE 393 567899**************************************************************************************** PP GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 rhe ++kW++rl++aGF+++pls+++++ +++llr ++ + y++ e++g+++lgWk+r+Lvs+SaW 28166.m001040 394 RHELFGKWKSRLTMAGFRQYPLSSYVNSVIRSLLRCYS-EHYTLLEKDGAMLLGWKNRNLVSASAW 458 ******************************9999.66*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	6.4E-17	199	289	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-56	298	458	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	22.637	301	440	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MESHPLFRYS SVTGAGISYS SSYPIAPSIP NRLSGPFQFA IGNSPNSPFS NQFDCDTITT 60 LSDSTEQYSP TENLSGASPS CNSSLESNNY FHHRSPSLLQ DANSGQNIKH RLLQLETALM 120 GPDDEDISMP NNALGESSRP QTSGQRTRAW CQERQGSRVI QPQPSFVSRQ RQACEGSSVE 180 KYHKGIEETG LQSIPPDNLK QLLIACAKAL SENNINEFDR LIEKARAAVS ISGEPIQRLG 240 AYLVEGLVAR KESSGNNIYH ALRCREPESK DLLSYMQILY EICPYLKFGC ELPLAASPHS 300 DESVDVSNPR DGLLRMIKSL NPKVVTLVEQ ESNTNTTPFL TRFMETLDFY LAMFESIDVR 360 LPRERKDRIG VEQHCLAKDI VNIIACEGKE RVERHELFGK WKSRLTMAGF RQYPLSSYVN 420 SVIRSLLRCY SEHYTLLEKD GAMLLGWKNR NLVSASAWY

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MESHPLFRYS SVTGAGISYS SSYPIAPSIP NRLSGPFQFA IGNSPNSPFS NQFDCDTITT  60
LSDSTEQYSP TENLSGASPS CNSSLESNNY FHHRSPSLLQ DANSGQNIKH RLLQLETALM  120
GPDDEDISMP NNALGESSRP QTSGQRTRAW CQERQGSRVI QPQPSFVSRQ RQACEGSSVE  180
KYHKGIEETG LQSIPPDNLK QLLIACAKAL SENNINEFDR LIEKARAAVS ISGEPIQRLG  240
AYLVEGLVAR KESSGNNIYH ALRCREPESK DLLSYMQILY EICPYLKFGC ELPLAASPHS  300
DESVDVSNPR DGLLRMIKSL NPKVVTLVEQ ESNTNTTPFL TRFMETLDFY LAMFESIDVR  360
LPRERKDRIG VEQHCLAKDI VNIIACEGKE RVERHELFGK WKSRLTMAGF RQYPLSSYVN  420
SVIRSLLRCY SEHYTLLEKD GAMLLGWKNR NLVSASAWY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-20	313	458	225	374	GRAS family transcription factor containing p
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015577067.1	0.0	PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 21
Swissprot	Q69VG1	2e-87	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	B9S9Z5	0.0	B9S9Z5_RICCO; Chitin-inducible gibberellin-responsive protein, putative
STRING	GSMUA_Achr9P12070_001	1e-152	(Musa acuminata)
STRING	GSMUA_Achr9P24710_001	1e-151	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4299	33	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04890.1	4e-74	SCARECROW-like 21

Link Out ? help Back to Top
Phytozome	28166.m001040